Transcript: lnc-KCNJ8-2:1

Basic information

LNCipedia transcript ID: lnc-KCNJ8-2:1 
LNCipedia gene ID: lnc-KCNJ8-2
Location (hg19): chr12:21807591-21910765
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 252 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT027257
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-KCNJ8-2:1 yes no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GYS2-1:1
4.0 lnc-KCNJ8-2:1
4.1 lnc-KCNJ8-2:1
5.0 lnc-KCNJ8-2:1
5.1 lnc-WBP11-50:1
5.2 lnc-KCNJ8-2:1