Transcript: lnc-KCNMB1-2:1

Basic information

LNCipedia transcript ID: lnc-KCNMB1-2:1 
LNCipedia gene ID: lnc-KCNMB1-2
Ensembl Gene ID: ENSG00000253591
Ensembl Transcript ID: ENST00000523591
Location (hg19): chr5:170066162-170108441
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1571 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523591.1; CTC-265N9.1-001; OTTHUMT00000371850.2; NONHSAT105055
Alternative gene names: ENSG00000253591.1; CTC-265N9.1; OTTHUMG00000163148.2; AC027312.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.1091 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNMB1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMB1-2:1
4.0 lnc-KCNMB1-2:1
4.1 lnc-KCNMB1-2:1
5.0 lnc-KCNMB1-2:1
5.1 lnc-PDLIM7-106:2
5.2 lnc-KCNMB1-2:1