Transcript: lnc-KCNQ2-2:1

Basic information

LNCipedia transcript ID: lnc-KCNQ2-2:1 
LNCipedia gene ID: lnc-KCNQ2-2
Location (hg19): chr20:62110073-62111644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1340 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028472; NONHSAT080883
Alternative gene names: XLOC_013845; linc-KCNQ2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2799 non-coding 
CPAT coding probability 22.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNQ2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNQ2-2:1
3.1 lnc-KCNQ2-2:1
4.0 lnc-KCNQ2-2:1
4.1 lnc-KCNQ2-2:1
5.0 lnc-KCNQ2-2:1
5.1 lnc-SPATA2-195:2
5.2 lnc-KCNQ2-2:1