Transcript: lnc-KCNT1-5:1

Basic information

LNCipedia transcript ID: lnc-KCNT1-5:1 
LNCipedia gene ID: lnc-KCNT1-5
Location (hg19): chr9:138760434-138764184
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2702 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_4284_NR_033913
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.9284 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNT1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNT1-5:1
4.0 lnc-KCNT1-5:1
4.1 lnc-KCNT1-5:1
5.0 lnc-KCNT1-5:1
5.1 lnc-GPSM1-17:1
5.2 lnc-KCNT1-5:1