Transcript: lnc-KDM4B-7:3

Basic information

LNCipedia transcript ID: lnc-KDM4B-7:3 
LNCipedia gene ID: lnc-KDM4B-7
Location (hg19): chr19:5293432-5295269
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1337 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000038333.1|ENCT00000200980.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -73.701 non-coding 
CPAT coding probability 15.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM4B-7:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-KDM4B-7:3
5.0 lnc-KDM4B-7:3
5.1 lnc-RPL36-17:2
5.2 lnc-KDM4B-7:3