Transcript: lnc-KDM4C-216:2

Basic information

LNCipedia transcript ID: lnc-KDM4C-216:2 
LNCipedia gene ID: lnc-KDM4C-216
Ensembl Gene ID: ENSG00000230920
Ensembl Transcript ID: ENST00000449531
Location (hg19): chr9:9799423-9803784
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 383 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449531; ENST00000449531.1; RP11-527D15.1-001; OTTHUMT00000051714.1; NONHSAT130198
Alternative gene names: ENSG00000230920; RP11-527D15.1; ENSG00000230920.1; OTTHUMG00000019546.1; AL513422.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -217.4215 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM4C-216:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM4C-8:1
3.1 lnc-KDM4C-10:1
4.0 lnc-KDM4C-10:1
4.1 lnc-KDM4C-10:1
5.0 lnc-KDM4C-10:1
5.1 lnc-RECK-216:2
5.2 lnc-KDM4C-216:2