Transcript: lnc-KDM8-1:2

Basic information

LNCipedia transcript ID: lnc-KDM8-1:2 
LNCipedia gene ID: lnc-KDM8-1
Ensembl Gene ID: ENSG00000234186
Ensembl Transcript ID: ENST00000418886
Location (hg19): chr16:27078219-27080486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2268 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418886; ENST00000418886.1; C16orf82-201
Alternative gene names: ENSG00000234186; C16orf82; ENSG00000234186.2; OTTHUMG00000161986.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7883 non-coding 
CPAT coding probability 28.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KDM8-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JMJD5-1:2
3.1 lnc-JMJD5-1:2
4.0 lnc-JMJD5-1:2
4.1 lnc-JMJD5-1:2
5.0 lnc-JMJD5-1:2
5.1 lnc-SGF29-38:2
5.2 lnc-KDM8-1:2