Transcript: lnc-KHNYN-2:10

Basic information

LNCipedia transcript ID: lnc-KHNYN-2:10 
LNCipedia gene ID: lnc-KHNYN-2
Location (hg19): chr14:25108305-25110411
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2240 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_8576_transcript_3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.6858 non-coding 
CPAT coding probability 10.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KHNYN-2:10 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-80A15.1.1-6:2
4.0 lnc-RP11-80A15.1.1-6:2
4.1 lnc-RP11-80A15.1.1-2:10
5.0 lnc-RP11-80A15.1.1-2:10
5.1 lnc-PABPN1-42:10
5.2 lnc-KHNYN-2:10