Transcript: lnc-KIAA1211L-1:7

Basic information

LNCipedia transcript ID: lnc-KIAA1211L-1:7 
LNCipedia gene ID: lnc-KIAA1211L-1
Location (hg19): chr2:99385424-99388543
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00003339; ENST00000448595; ENST00000448595.1; AC109826.2-001; OTTHUMT00000329947.1
Alternative gene names: XLOC_002221; linc-MGAT4A; ENSG00000239795; AC109826.2; ENSG00000239795.1; OTTHUMG00000153172.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.2573 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIAA1211L-1:7 no no no no

Available literature

  1. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf55-1:4
3.1 lnc-C2orf55-1:4
4.0 lnc-C2orf55-1:4
4.1 lnc-C2orf55-1:4
5.0 lnc-C2orf55-1:4
5.1 lnc-AFF3-18:7
5.2 lnc-KIAA1211L-1:7