Transcript: lnc-KIF20B-1:2

Basic information

LNCipedia transcript ID: lnc-KIF20B-1:2 
LNCipedia gene ID: lnc-KIF20B-1
Ensembl Gene ID: ENSG00000232936
Ensembl Transcript ID: ENST00000451733
Location (hg19): chr10:91405199-91410424
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 445 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451733.1; RP11-80H5.2-002; OTTHUMT00000049322.1; NONHSAT015521
Alternative gene names: ENSG00000232936.1; RP11-80H5.2; OTTHUMG00000018719.1; ENSG00000232936.5; AL157400.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.5308 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIF20B-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIF20B-1:2
4.0 lnc-KIF20B-1:2
4.1 lnc-KIF20B-1:2
5.0 lnc-KIF20B-1:2
5.1 lnc-SMC3-283:9
5.2 lnc-KIF20B-1:2