Transcript: lnc-KIZ-5:2

Basic information

LNCipedia transcript ID: lnc-KIZ-5:2 
LNCipedia gene ID: lnc-KIZ-5
Ensembl Gene ID: ENSG00000234104
Ensembl Transcript ID: ENST00000432942
Location (hg19): chr20:20951089-20953203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027908; ENST00000432942; ENST00000432942.1; RP5-1177M21.1-001; OTTHUMT00000078250.1; NONHSAT078910
Alternative gene names: XLOC_013477; linc-PLK1S1-1; ENSG00000234104; RP5-1177M21.1; ENSG00000234104.1; OTTHUMG00000032013.1; AL133465.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.9207 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIZ-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRN2-3:1
3.1 lnc-XRN2-5:1
4.0 lnc-XRN2-5:1
4.1 lnc-XRN2-5:1
5.0 lnc-XRN2-5:1
5.1 lnc-KIZ-5:1
5.2 lnc-KIZ-5:2