Transcript: lnc-KLF13-2:8

Basic information

LNCipedia transcript ID: lnc-KLF13-2:8 
LNCipedia gene ID: lnc-KLF13-2
Location (hg19): chr15:31685046-31696932
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1772 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500533; TCONS_00023259; NONHSAT041457
Alternative gene names: ENSG00000246638; XLOC_011202; linc-CHRNA7; AC104759.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.1886 non-coding 
CPAT coding probability 27.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLF13-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAN1-1:1
3.1 lnc-FAN1-2:1
4.0 lnc-KLF13-2:8
4.1 lnc-KLF13-2:8
5.0 lnc-KLF13-2:8
5.1 lnc-SNRPN-132:4
5.2 lnc-KLF13-2:8