Transcript: lnc-KLHL32-4:17

Basic information

LNCipedia transcript ID: lnc-KLHL32-4:17 
LNCipedia gene ID: lnc-KLHL32-4
Ensembl Gene ID: ENSG00000271860
Ensembl Transcript ID: ENST00000574739
Location (hg19): chr6:97753462-97757924
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 578 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574739.1; RP3-418C23.2-003; OTTHUMT00000438230.1; NONHSAT114085
Alternative gene names: ENSG00000226684.2; RP3-418C23.2; OTTHUMG00000015249.2; ENSG00000271860.6; RP11-436D23.1; AL589740.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.8844 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL32-4:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KLHL32-2:2
4.0 lnc-KLHL32-4:17
4.1 lnc-KLHL32-4:17
5.0 lnc-KLHL32-4:17
5.1 lnc-PM20D2-65:6
5.2 lnc-KLHL32-4:17