Transcript: lnc-KLHL32-4:22

Basic information

LNCipedia transcript ID: lnc-KLHL32-4:22 
LNCipedia gene ID: lnc-KLHL32-4
Location (hg19): chr6:98150157-98155979
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 501 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000433637; ENST00000433637.1; RP1-104O17.1-001; OTTHUMT00000041578.1; NONHSAT114087; FPKM1_group_28050_transcript_1
Alternative gene names: ENSG00000224849; RP1-104O17.1; ENSG00000224849.2; OTTHUMG00000015250.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.8897 non-coding 
CPAT coding probability 2.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHL32-4:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHL32-2:1
3.1 lnc-KLHL32-3:1
4.0 lnc-KLHL32-4:22
4.1 lnc-KLHL32-4:22
5.0 lnc-KLHL32-4:22
5.1 lnc-PM20D2-65:26
5.2 lnc-KLHL32-4:22