Transcript: lnc-KRBOX1-1:6

Basic information

LNCipedia transcript ID: lnc-KRBOX1-1:6 
LNCipedia gene ID: lnc-KRBOX1-1
Ensembl Gene ID: ENSG00000273328
Ensembl Transcript ID: ENST00000496604
Location (hg19): chr3:42850906-42938816
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 837 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT089267; ENST00000496604.1; ENST00000496604.5
Alternative gene names: ENSG00000273328.1; RP11-141M3.5; ENSG00000273328.5; RP11-141M3.6; AC099329.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4066 non-coding 
CPAT coding probability 4.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRBOX1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRBOX1-1:1
4.0 lnc-CCBP2-1:3
4.1 lnc-CCBP2-1:3
5.0 lnc-CCBP2-1:3
5.1 lnc-KLHL40-8:1
5.2 lnc-KRBOX1-1:6