Transcript: lnc-KRR1-4:17

Basic information

LNCipedia transcript ID: lnc-KRR1-4:17 
LNCipedia gene ID: lnc-KRR1-4
Location (hg19): chr12:76084537-76086138
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000552466.1; RP11-114H23.1-002; OTTHUMT00000405839.1; NONHSAT029542
Alternative gene names: ENSG00000258077.1; RP11-114H23.1; OTTHUMG00000169765.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -310.1831 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRR1-4:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRR1-2:2
4.0 lnc-PHLDA1-4:2
4.1 lnc-KRR1-4:17
5.0 lnc-KRR1-4:17
5.1 lnc-LRRC10-48:13
5.2 lnc-KRR1-4:17