Transcript: lnc-KRT80-2:2

Basic information

LNCipedia transcript ID: lnc-KRT80-2:2 
LNCipedia gene ID: lnc-KRT80-2
Location (hg19): chr12:52486858-52488557
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 520 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021312; NONHSAT028333
Alternative gene names: XLOC_010079; linc-FIGNL2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.834 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRT80-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRT80-1:1
3.1 lnc-KRT80-2:2
4.0 lnc-KRT80-2:2
4.1 lnc-KRT80-2:2
5.0 lnc-KRT80-2:2
5.1 lnc-FIGNL2-2:8
5.2 lnc-KRT80-2:2