Transcript: lnc-KRT81-1:1

Basic information

LNCipedia transcript ID: lnc-KRT81-1:1 
LNCipedia gene ID: lnc-KRT81-1
Location (hg19): chr12:52679697-52709719
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 656 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000552398.1; RP11-259K21.3-001; OTTHUMT00000405180.1; NONHSAT028360
Alternative gene names: ENSG00000257540.1; RP11-259K21.3; OTTHUMG00000169630.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -375.4159 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRT81-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT81-1:1
4.0 lnc-KRT81-1:1
4.1 lnc-KRT81-1:1
5.0 lnc-KRT81-1:1
5.1 lnc-KRT2-11:1
5.2 lnc-KRT81-1:1