Transcript: lnc-KRTAP5-11-2:1

Basic information

LNCipedia transcript ID: lnc-KRTAP5-11-2:1 
LNCipedia gene ID: lnc-KRTAP5-11-2
Location (hg19): chr11:71383721-71421627
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000527566.1; RP11-167J8.2-001; OTTHUMT00000394694.1; NONHSAT022696
Alternative gene names: ENSG00000254504.1; RP11-167J8.2; OTTHUMG00000167458.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.3292 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTAP5-11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000867.1-2:1
4.0 lnc-AP000867.1-2:1
4.1 lnc-AP000867.1-2:1
5.0 lnc-AP000867.1-2:1
5.1 lnc-UCP3-65:1
5.2 lnc-KRTAP5-11-2:1