Transcript: lnc-LAMA1-8:1

Basic information

LNCipedia transcript ID: lnc-LAMA1-8:1 
LNCipedia gene ID: lnc-LAMA1-8
Location (hg19): chr18:7500294-7568727
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3960 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000036860.1|MICT00000158272.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.553 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LAMA1-8:1
5.0 lnc-LAMA1-8:1
5.1 lnc-SMAD2-323:1
5.2 lnc-LAMA1-8:1