Transcript: lnc-LAMA4-1:4

Basic information

LNCipedia transcript ID: lnc-LAMA4-1:4 
LNCipedia gene ID: lnc-LAMA4-1
Location (hg19): chr6:112713171-112717586
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1003 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012249; NONHSAT114523
Alternative gene names: XLOC_005807; linc-LAMA4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.2132 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA4-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAMA4-1:4
3.1 lnc-LAMA4-1:4
4.0 lnc-LAMA4-1:4
4.1 lnc-LAMA4-1:4
5.0 lnc-LAMA4-1:4
5.1 lnc-LAMA4-11:4
5.2 lnc-LAMA4-1:4