Transcript: lnc-LAMB3-2:2

Basic information

LNCipedia transcript ID: lnc-LAMB3-2:2 
LNCipedia gene ID: lnc-LAMB3-2
Ensembl Gene ID: ENSG00000224260
Ensembl Transcript ID: ENST00000453331
Location (hg19): chr1:209701886-209720925
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 6
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000721; ENST00000453331.1; RP1-272L16.1-002; OTTHUMT00000088524.1; NONHSAT009220
Alternative gene names: XLOC_001186; linc-PLXNA2-3; ENSG00000224260.1; RP1-272L16.1; OTTHUMG00000036359.1; ENSG00000224260.2; ENSG00000224260.6; AL023754.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.7511 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMB3-2:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Liu (2014), A computational framework to infer human disease-associated long noncoding RNAs., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAMB3-1:2
3.1 lnc-LAMB3-2:2
4.0 lnc-LAMB3-2:2
4.1 lnc-LAMB3-2:2
5.0 lnc-LAMB3-2:2
5.1 lnc-IRF6-12:8
5.2 lnc-LAMB3-2:2