Transcript: lnc-LARGE1-11:1

Basic information

LNCipedia transcript ID: lnc-LARGE1-11:1 
LNCipedia gene ID: lnc-LARGE1-11
Ensembl Gene ID: ENSG00000237316
Ensembl Transcript ID: ENST00000440858
Location (hg19): chr22:35107899-35120910
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029477; ENST00000440858; ENST00000440858.1; RP1-288L1.4-001; OTTHUMT00000320593.1; NONHSAT085037
Alternative gene names: XLOC_014358; linc-LARGE-7; ENSG00000237316; RP1-288L1.4; ENSG00000237316.1; OTTHUMG00000150933.1; Z82196.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.3399 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LARGE1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LARGE-5:1
3.1 lnc-LARGE-5:1
4.0 lnc-LARGE-5:1
4.1 lnc-LARGE-5:1
5.0 lnc-LARGE-5:1
5.1 lnc-APOL3-14:1
5.2 lnc-LARGE1-11:1