Transcript: lnc-LARGE1-1:5

Basic information

LNCipedia transcript ID: lnc-LARGE1-1:5 
LNCipedia gene ID: lnc-LARGE1-1
Ensembl Gene ID: ENSG00000224404
Ensembl Transcript ID: ENST00000450365
Location (hg19): chr22:34604130-34605251
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029475; ENST00000450365; ENST00000450365.1; LL22NC03-13G6.2-001; OTTHUMT00000320585.1; NONHSAT085028
Alternative gene names: XLOC_014354; linc-LARGE-4; ENSG00000224404; LL22NC03-13G6.2; ENSG00000224404.1; OTTHUMG00000150930.1; Z68323.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -342.8236 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LARGE1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LARGE-1:3
3.1 lnc-LARGE-1:3
4.0 lnc-LARGE-1:3
4.1 lnc-LARGE-1:3
5.0 lnc-LARGE-1:3
5.1 lnc-SYN3-17:5
5.2 lnc-LARGE1-1:5