Transcript: lnc-LARP1B-1:1

Basic information

LNCipedia transcript ID: lnc-LARP1B-1:1 
LNCipedia gene ID: lnc-LARP1B-1
Ensembl Gene ID: ENSG00000251432
Ensembl Transcript ID: ENST00000505133
Location (hg19): chr4:129213906-129387816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 637 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505133; ENST00000505133.1; RP11-420A23.1-005; OTTHUMT00000366738.1; NONHSAT098263; ENST00000505133.5
Alternative gene names: ENSG00000251432; RP11-420A23.1; ENSG00000251432.2; OTTHUMG00000161321.3; ENSG00000251432.6; AC108062.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.828 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LARP1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LARP1B-1:1
3.1 lnc-LARP1B-1:1
4.0 lnc-LARP1B-1:1
4.1 lnc-LARP1B-1:1
5.0 lnc-LARP1B-1:1
5.1 lnc-ABHD18-5:13
5.2 lnc-LARP1B-1:1