Transcript: lnc-LBX1-2:1

Basic information

LNCipedia transcript ID: lnc-LBX1-2:1 
LNCipedia gene ID: lnc-LBX1-2
Location (hg19): chr10:102896232-102899468
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 816 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000411459.1; RP11-31L23.3-001; OTTHUMT00000049924.1; NONHSAT016018
Alternative gene names: ENSG00000226740.1; RP11-31L23.3; OTTHUMG00000018924.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -202.3341 non-coding 
CPAT coding probability 81.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LBX1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LBX1-2:1
4.0 lnc-LBX1-2:1
4.1 lnc-LBX1-2:1
5.0 lnc-LBX1-2:1
5.1 lnc-CPN1-44:1
5.2 lnc-LBX1-2:1