Transcript: lnc-LBX1-3:1

Basic information

LNCipedia transcript ID: lnc-LBX1-3:1 
LNCipedia gene ID: lnc-LBX1-3
Location (hg19): chr10:103082400-103082763
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 282 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018033; ENST00000450669; ENST00000450669.1; RP11-107I14.5-001; OTTHUMT00000049935.1; NONHSAT016051
Alternative gene names: XLOC_008924; linc-LBX1-2; ENSG00000230967; RP11-107I14.5; ENSG00000230967.1; OTTHUMG00000018931.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.3736 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LBX1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LBX1-2:1
3.1 lnc-LBX1-3:1
4.0 lnc-LBX1-3:1
4.1 lnc-LBX1-3:1
5.0 lnc-LBX1-3:1
5.1 lnc-CPN1-50:2
5.2 lnc-LBX1-3:1