Transcript: lnc-LEF1-3:12

Basic information

LNCipedia transcript ID: lnc-LEF1-3:12 
LNCipedia gene ID: lnc-LEF1-3
Location (hg19): chr4:108908048-108910629
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 583 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008546; NONHSAT097733
Alternative gene names: XLOC_004041; linc-PAPSS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.8913 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEF1-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LEF1-1:1
3.1 lnc-LEF1-1:1
4.0 lnc-LEF1-7:1
4.1 lnc-LEF1-3:12
5.0 lnc-LEF1-3:12
5.1 lnc-TIFA-33:7
5.2 lnc-LEF1-3:12