Transcript: lnc-LGALS9B-2:4

Basic information

LNCipedia transcript ID: lnc-LGALS9B-2:4 
LNCipedia gene ID: lnc-LGALS9B-2
Ensembl Gene ID: ENSG00000264422
Ensembl Transcript ID: ENST00000580931
Location (hg19): chr17:20479980-20482061
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 353 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580931.1; RP11-434D2.12-001; OTTHUMT00000443935.1; NONHSAT146823
Alternative gene names: ENSG00000264422.1; RP11-434D2.12; OTTHUMG00000178913.1; AC015818.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.373 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LGALS9B-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LGALS9B-2:4
4.0 lnc-LGALS9B-2:4
4.1 lnc-LGALS9B-2:4
5.0 lnc-LGALS9B-2:4
5.1 lnc-B9D1-56:4
5.2 lnc-LGALS9B-2:4