Transcript: lnc-LGALS9B-2:5

Basic information

LNCipedia transcript ID: lnc-LGALS9B-2:5 
LNCipedia gene ID: lnc-LGALS9B-2
Location (hg19): chr17:20478827-20480255
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 804 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026046; NONHSAT146820
Alternative gene names: XLOC_012419; linc-LGALS9B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.382 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LGALS9B-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LGALS9B-1:4
3.1 lnc-LGALS9B-2:5
4.0 lnc-LGALS9B-2:5
4.1 lnc-LGALS9B-2:5
5.0 lnc-LGALS9B-2:5
5.1 lnc-B9D1-56:5
5.2 lnc-LGALS9B-2:5