Transcript: lnc-LGALSL-2:1

Basic information

LNCipedia transcript ID: lnc-LGALSL-2:1 
LNCipedia gene ID: lnc-LGALSL-2
Location (hg19): chr2:64370373-64456739
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438115; ENST00000438115.1; AC074289.1-001; OTTHUMT00000327084.1; NONHSAT071091
Alternative gene names: ENSG00000225889; AC074289.1; ENSG00000225889.2; OTTHUMG00000152632.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -301.7591 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LGALSL-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LGALSL-2:1
3.1 lnc-LGALSL-2:1
4.0 lnc-LGALSL-2:1
4.1 lnc-LGALSL-2:1
5.0 lnc-LGALSL-2:1
5.1 lnc-AFTPH-15:1
5.2 lnc-LGALSL-2:1