Transcript: lnc-LGSN-1:1

Basic information

LNCipedia transcript ID: lnc-LGSN-1:1 
LNCipedia gene ID: lnc-LGSN-1
Location (hg19): chr6:65438730-65443460
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 417 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000433531.1; RP11-69I22.3-002; OTTHUMT00000041097.1
Alternative gene names: ENSG00000243828.1; RP11-69I22.3; OTTHUMG00000014960.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.8315 non-coding 
CPAT coding probability 70.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LGSN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LGSN-1:1
4.0 lnc-LGSN-1:1
4.1 lnc-LGSN-1:1
5.0 lnc-LGSN-1:1
5.1 lnc-GSTA5-69:1
5.2 lnc-LGSN-1:1