Transcript: lnc-LHX2-2:1

Basic information

LNCipedia transcript ID: lnc-LHX2-2:1 
LNCipedia gene ID: lnc-LHX2-2
Ensembl Gene ID: ENSG00000230826
Ensembl Transcript ID: ENST00000423942
Location (hg19): chr9:126498716-126514220
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 788 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423942.1; RP11-417B4.2-001; OTTHUMT00000053993.1; NONHSAT134662
Alternative gene names: ENSG00000230826.1; RP11-417B4.2; OTTHUMG00000020640.1; AL390774.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -421.4217 non-coding 
CPAT coding probability 12.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LHX2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LHX2-2:1
4.0 lnc-LHX2-2:1
4.1 lnc-LHX2-2:1
5.0 lnc-LHX2-2:1
5.1 lnc-DAB2IP-32:1
5.2 lnc-LHX2-2:1