Transcript: lnc-LIG3-4:1

Basic information

LNCipedia transcript ID: lnc-LIG3-4:1 
LNCipedia gene ID: lnc-LIG3-4
Ensembl Gene ID: ENSG00000273687
Ensembl Transcript ID: ENST00000612426
Location (hg19): chr17:33345679-33346010
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 332 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612426.1
Alternative gene names: ENSG00000273687.1; RP5-837J1.6; AC004223.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -150.6899 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIG3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC004223.1-4:1
4.1 lnc-AC004223.1-4:1
5.0 lnc-AC004223.1-4:1
5.1 lnc-RPL19-88:1
5.2 lnc-LIG3-4:1