Transcript: lnc-LIMK2-5:2

Basic information

LNCipedia transcript ID: lnc-LIMK2-5:2 
LNCipedia gene ID: lnc-LIMK2-5
Location (hg19): chr22:31885903-31887548
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1646 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000057472.1|MICT00000232338.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.0673 non-coding 
CPAT coding probability 8.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMK2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AC005003.1-5:1
5.0 lnc-AC005003.1-5:1
5.1 lnc-LIMK2-8:1
5.2 lnc-LIMK2-5:2