Transcript: lnc-LIMS3-1:13

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:13 
LNCipedia gene ID: lnc-LIMS3-1
Location (hg19): chr2:110695015-110742667
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1925 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000454928.1; AC013271.3-002; OTTHUMT00000330195.1
Alternative gene names: ENSG00000186148.6; AC013271.3; OTTHUMG00000153222.1; ENSG00000186148.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 178.949 coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS3-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3.1-1:4
4.0 lnc-LIMS3-1:13
4.1 lnc-LIMS3-1:13
5.0 lnc-LIMS3-1:13
5.1 lnc-SULT1C4-22:8
5.2 lnc-LIMS3-1:13