Transcript: lnc-LIMS3-1:14

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:14 
LNCipedia gene ID: lnc-LIMS3-1
Ensembl Gene ID: ENSG00000283684
Ensembl Transcript ID: ENST00000454928
Location (hg19): chr2:110695015-110742701
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1959 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454928.5
Alternative gene names: ENSG00000186148.11; AC013271.3; ENSG00000283684.1; AC013271.5; AC013268.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 178.949 coding 
CPAT coding probability 99.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS3-1:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LIMS3-1:14
4.1 lnc-LIMS3-1:14
5.0 lnc-LIMS3-1:14
5.1 lnc-SULT1C4-22:9
5.2 lnc-LIMS3-1:14