Transcript: lnc-LIMS3-1:17

Basic information

LNCipedia transcript ID: lnc-LIMS3-1:17 
LNCipedia gene ID: lnc-LIMS3-1
Location (hg19): chr2:110705291-110726129
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 730 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000433786.1; AC013271.3-003; OTTHUMT00000330196.1
Alternative gene names: ENSG00000186148.6; AC013271.3; OTTHUMG00000153222.1; ENSG00000186148.7; ENSG00000186148.11; ENSG00000186148.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 52.7436 non-coding 
CPAT coding probability 7.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LIMS3-1:17 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3.1-1:6
4.0 lnc-LIMS3-1:17
4.1 lnc-LIMS3-1:17
5.0 lnc-LIMS3-1:17
5.1 lnc-SULT1C4-22:12
5.2 lnc-LIMS3-1:17