Transcript: lnc-LIMS3-2:4

Basic information

LNCipedia transcript ID: lnc-LIMS3-2:4 
LNCipedia gene ID: lnc-LIMS3-2
Location (hg19): chr2:110992312-111023767
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 814 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000562665.1; RP11-1223D19.1-004; OTTHUMT00000431535.1; NONHSAT073180; ENST00000562665.5
Alternative gene names: ENSG00000261760.1; RP11-1223D19.1; OTTHUMG00000176121.1; ENSG00000261760.2; ENSG00000261760.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.39 non-coding 
CPAT coding probability 21.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIMS3-2:4 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIMS3-2:4
4.0 lnc-LIMS3-2:4
4.1 lnc-LIMS3-2:4
5.0 lnc-LIMS3-2:4
5.1 lnc-SULT1C4-24:4
5.2 lnc-LIMS3-2:4