Transcript: lnc-LIN28B-3:3

Basic information

LNCipedia transcript ID: lnc-LIN28B-3:3 
LNCipedia gene ID: lnc-LIN28B-3
Location (hg19): chr6:103987270-103988696
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT114183; FPKM1_group_28106_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.2253 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIN28B-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN28B-3:3
4.0 lnc-LIN28B-3:3
4.1 lnc-LIN28B-3:3
5.0 lnc-LIN28B-3:3
5.1 lnc-SMPD2-74:2
5.2 lnc-LIN28B-3:3