Transcript: lnc-LIN37-3:1

Basic information

LNCipedia transcript ID: lnc-LIN37-3:1 
LNCipedia gene ID: lnc-LIN37-3
Ensembl Gene ID: ENSG00000267328
Ensembl Transcript ID: ENST00000587767
Location (hg19): chr19:36245467-36246391
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 660 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT065912; ENST00000587767.1
Alternative gene names: ENSG00000267328.1; AC002398.12; AC002398.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.753 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIN37-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIN37-3:1
4.0 lnc-LIN37-3:1
4.1 lnc-LIN37-3:1
5.0 lnc-LIN37-3:1
5.1 lnc-GPR42-39:1
5.2 lnc-LIN37-3:1