Transcript: lnc-LINC00483-1:13

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:13 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg19): chr17:48842140-48844879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 559 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000167117.4|ENST00000419688.1
Alternative gene names: FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -147.2204 non-coding 
CPAT coding probability 3.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LINC00483-1:13 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00483:17
5.0 LINC00483:17
5.1 lnc-ANKRD40-5:13
5.2 lnc-LINC00483-1:13