Transcript: lnc-LINC00483-1:16

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:16 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg19): chr17:48838535-48844877
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 686 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000450727; ENST00000450727.1; LINC00483-003; OTTHUMT00000280511.1; ENST00000450727.5
Alternative gene names: ENSG00000167117; C17orf73; ENSG00000167117.4; LINC00483; OTTHUMG00000132429.5; ENSG00000167117.8; FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4013 non-coding 
CPAT coding probability 62.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00483-1:16 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD40-1:4
3.1 lnc-ANKRD40-1:5
4.0 LINC00483:6
4.1 LINC00483:6
5.0 LINC00483:6
5.1 lnc-ANKRD40-5:16
5.2 lnc-LINC00483-1:16