Transcript: lnc-LINC00483-1:3

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:3 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg19): chr17:48838390-48844879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2763 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000300458; ENST00000300458.1; LINC00483-001; OTTHUMT00000255568.1; NONHSAT054719
Alternative gene names: ENSG00000167117; C17orf73; ENSG00000167117.4; LINC00483; OTTHUMG00000132429.5; ENSG00000167117.8; FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4013 non-coding 
CPAT coding probability 25.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LINC00483-1:3 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD40-1:2
3.1 lnc-ANKRD40-1:3
4.0 LINC00483:3
4.1 LINC00483:3
5.0 LINC00483:3
5.1 lnc-ANKRD40-5:3
5.2 lnc-LINC00483-1:3