Transcript: lnc-LINC00483-1:7

Basic information

LNCipedia transcript ID: lnc-LINC00483-1:7 
LNCipedia gene ID: lnc-LINC00483-1
Location (hg19): chr17:48833504-48844879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4897 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000167117.4|MICT00000150580.1
Alternative gene names: FLJ20694


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.2485 non-coding 
CPAT coding probability 42.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LINC00483-1:7 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00483:11
5.0 LINC00483:11
5.1 lnc-ANKRD40-5:7
5.2 lnc-LINC00483-1:7