Transcript: lnc-LIPG-2:1

Basic information

LNCipedia transcript ID: lnc-LIPG-2:1 
LNCipedia gene ID: lnc-LIPG-2
Ensembl Gene ID: ENSG00000265496
Ensembl Transcript ID: ENST00000581232
Location (hg19): chr18:47013709-47018248
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 582 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581232.1; hsa-mir-1539.1-001; OTTHUMT00000447660.1; NONHSAT059226
Alternative gene names: ENSG00000265496.1; hsa-mir-1539; OTTHUMG00000179691.1; ENSG00000265496.2; MIR1539; ENSG00000265496.3; ENSG00000265496.4; ENSG00000265496.5; AC100778.4; AC100778.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.2355 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LIPG-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIPG-2:1
4.0 lnc-LIPG-2:1
4.1 lnc-LIPG-2:1
5.0 lnc-LIPG-2:1
5.1 lnc-CTIF-11:2
5.2 lnc-LIPG-2:1