Transcript: lnc-LNPEP-8:3

Basic information

LNCipedia transcript ID: lnc-LNPEP-8:3 
LNCipedia gene ID: lnc-LNPEP-8
RefSeq ID: NR_105028
Location (hg19): chr5:96840400-97006755
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 729 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105028; NR_105028.1
Alternative gene names: ; LINC01340


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.6031 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNPEP-8:3 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2215E18.1.1-2:3
4.0 LINC01340:3
4.1 LINC01340:3
5.0 LINC01340:3
5.1 lnc-GPR150-49:3
5.2 lnc-LNPEP-8:3