Transcript: lnc-LNPEP-8:7

Basic information

LNCipedia transcript ID: lnc-LNPEP-8:7 
HGNC Gene Symbol: lnc-LNPEP-8    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2234
Ensembl Gene ID: ENSG00000248202
Ensembl Transcript ID: ENST00000513288
Location (hg19): chr5:97217132-97258399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 705 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009469; ENST00000513288; ENST00000513288.1; RP11-455B3.1-001; OTTHUMT00000370176.1; NONHSAT102937
Alternative gene names: XLOC_004484; linc-RGMB-1; ENSG00000248202; RP11-455B3.1; ENSG00000248202.1; OTTHUMG00000162710.1; ; LINC02234


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.1969 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNPEP-8:7 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2215E18.1.1-2:2
3.1 lnc-CTD-2215E18.1.1-3:2
4.0 lnc-CTD-2215E18.1.1-3:2
4.1 LINC01340:7
5.0 LINC01340:7
5.1 lnc-GPR150-49:7
5.2 lnc-LNPEP-8:7