Transcript: lnc-LNX2-1:2

Basic information

LNCipedia transcript ID: lnc-LNX2-1:2 
LNCipedia gene ID: lnc-LNX2-1
Ensembl Gene ID: ENSG00000273552
Ensembl Transcript ID: ENST00000611364
Location (hg19): chr13:28241677-28254703
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 862 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611364.1
Alternative gene names: ENSG00000273552.1; RP11-87C7.3; AL136439.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.6487 non-coding 
CPAT coding probability 27.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNX2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LNX2-1:2
4.1 lnc-LNX2-1:2
5.0 lnc-LNX2-1:2
5.1 lnc-SLC7A1-22:2
5.2 lnc-LNX2-1:2