Transcript: lnc-LOX-4:3

Basic information

LNCipedia transcript ID: lnc-LOX-4:3 
LNCipedia gene ID: lnc-LOX-4
Ensembl Gene ID: ENSG00000250328
Ensembl Transcript ID: ENST00000509993
Location (hg19): chr5:121772454-121804762
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 783 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509993.1; CTC-210G5.1-004; OTTHUMT00000371230.1; NONHSAT103475
Alternative gene names: ENSG00000250328.1; CTC-210G5.1; OTTHUMG00000162973.1; ENSG00000250328.5; MGC32805; AC022101.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -271.9986 non-coding 
CPAT coding probability 29.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LOX-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LOX-4:3
4.0 lnc-LOX-4:3
4.1 lnc-LOX-4:3
5.0 lnc-LOX-4:3
5.1 lnc-LOX-4:3
5.2 lnc-LOX-4:3